Information for 5-AGTGRACTCTAGC (Motif 3)

C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C
Reverse Opposite:
A T C G G T A C C G A T C G T A C T A G C T G A A T C G A G C T A G C T A T G C T C G A A G T C A G C T
p-value:1e-14
log p-value:-3.385e+01
Information Content per bp:1.686
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.5 +/- 27.7bp
Average Position of motif in Background46.0 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGTGRACTCTAGC-
NNATTGGACTTTNGNN
 A C G T A C G T C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGTGRACTCTAGC---
----GGCTCYAKCAYC
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGTGRACTCTAGC-
--AGGTCTCTAACC
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T
A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGTGRACTCTAGC-----
--TGGACTTTGNNCTNTG
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGTGRACTCTAGC----
--NNAATTCTCGNTNAN
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGTGRACTCTAGC---
-BCNGGTTCTAGANCN
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T A C G T A C G T
A C G T A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AGTGRACTCTAGC----
--TGGACTTTGNNCTCN
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGTGRACTCTAGC
--TGACCYCT---
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---AGTGRACTCTAGC-
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

Hnf4a/MA0114.3/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGTGRACTCTAGC---
ATTGGACTTTGACCCC
 C T G A T C A G A G C T A T C G T C G A C T G A T A G C A G C T A G T C C G A T C G T A C A T G T A G C A C G T A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C