Information for 6-WAATTCRKYATYA (Motif 4)

C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A A C G T C T A G G T A C G A C T A C T G C G T A C G T A A G C T A C G T C G T A
p-value:1e-15
log p-value:-3.628e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.7 +/- 26.1bp
Average Position of motif in Background24.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0132.1_Pax6/Jaspar

Match Rank:1
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------WAATTCRKYATYA
GNNAATTAATTAATCA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----WAATTCRKYATYA
NNNNTGAATTCANNNC--
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-WAATTCRKYATYA
CTAATTAG------
 A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:WAATTCRKYATYA
AAATTAATTAATC
 C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0127.1_Nobox/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----WAATTCRKYATYA
CGCGCTAATTAGGTATC-
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C A C G T

PH0108.1_Msx3/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----WAATTCRKYATYA
NNNTTAATTGGTTTTN-
 A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----WAATTCRKYATYA
NNNACTAATTAATTANC-
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C A C G T

PH0059.1_Hoxb4/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----WAATTCRKYATYA
CGCGTTAATTAATTACC-
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
T A G C C T A G G T A C C T A G G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G C T G C A T T G C A G T A C A G T C A C G T

PH0143.1_Pou2f1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------WAATTCRKYATYA
ATATATTAATTAAGTA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
C T G A G A C T C T A G G C A T C T G A G C A T G C A T G T C A C G T A C G A T A C G T G C T A C T G A A C T G G C A T C G T A A C G T A C G T A C G T

PH0176.1_Vsx1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----WAATTCRKYATYA
CGAGTTAATTAATAATT-
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A A C G T A C G T A G T C C T G A A C T G A G T C C G T A A C G T A G T C C G T A
G T A C T A C G G T C A C T A G G A C T G A C T G T C A C G T A G A C T A C G T C T G A C T G A G A C T C T G A T G C A G C A T A G C T A C G T