Information for 5-GCAGCATTTTCAT (Motif 3)

A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
Reverse Opposite:
G T C A C A G T A C T G C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C G T A T C G A G T C
p-value:1e-15
log p-value:-3.628e+01
Information Content per bp:1.905
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.3 +/- 25.2bp
Average Position of motif in Background84.0 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0042.1_Mafk_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCATTTTCAT
AAGTCAGCANTTTTN-
 A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAGCATTTTCAT
HWWGTCAGCAWWTTT--
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCATTTTCAT
NGTCAGCANTTT---
 A C G T A C G T A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAGCATTTTCAT--
--TTCATTTGCATAT
 A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

MAFK/MA0496.1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCAGCATTTTCAT
CTGAGTCAGCAATTT---
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCAGCATTTTCAT
---GHATATKCAT
 A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

MAFF/MA0495.1/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GCAGCATTTTCAT
GCTGAGTCAGCAATTTTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCAGCATTTTCAT--
-----ATTTGCATAA
 A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCAGCATTTTCAT--
-----ATTTGCATAT
 A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCATTTTCAT
NNGCACCTTTCTCC-
 A C G T A C G T A C T G A T G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T