Information for 10-TGGRACMATGCAA (Motif 8)

A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G A T G C C G T A A C G T C A G T A C T G A C G T A G C T A G T C A G T C C G T A
p-value:1e-10
log p-value:-2.388e+01
Information Content per bp:1.902
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 29.3bp
Average Position of motif in Background63.4 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGGRACMATGCAA-
TGGCACCATGCCAA
 A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGRACMATGCAA--
AATGAACAATGGAATT
 A C G T A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGRACMATGCAA
-VRRACAAWGG--
 A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGRACMATGCAA
-GGAACAAAGR--
 A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGGRACMATGCAA
-AAAACAATGG--
 A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGRACMATGCAA--
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGRACMATGCAA
-VRAACAATGG--
 A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGGRACMATGCAA-
TTTAGAACAATAAAAT
 A C G T A C G T A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGGRACMATGCAA
--GAACAATGGN-
 A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGRACMATGCAA-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C T G A C T G T C A G C G T A A G T C G T A C G T C A A C G T A T C G A G T C C G T A C G T A A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T