Information for 7-TGTTGAGCTACAT (Motif 3)

A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T
Reverse Opposite:
G T C A C G A T A C T G A G C T C T G A A C T G A G T C A C G T A G T C C G T A C G T A G T A C G T C A
p-value:1e-16
log p-value:-3.690e+01
Information Content per bp:1.834
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 28.5bp
Average Position of motif in Background36.4 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGTTGAGCTACAT---
--TTGACCTANTTATN
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TGTTGAGCTACAT-
---NTTGATACATT
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------TGTTGAGCTACAT-
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGAGCTACAT
ATATTTACATA---
 A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T
C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGAGCTACAT
TTTGTTTACTTA---
 A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTGAGCTACAT
NNCTTTGTTTTGNTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TGTTGAGCTACAT-----
--TNNTGCTACTGTNNNN
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TGTTGAGCTACAT-
--NTGATTGACAGN
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGTTGAGCTACAT
CNTGTTTACATA---
 A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T A C G T

ZBED1/MA0749.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGAGCTACAT
TATGTCGCGATAG--
 A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T G A C A G C T C T G A A G T C C G T A A C G T
G A C T T G C A C G A T C T A G A G C T A G T C C T A G A G T C T C A G C T G A A G C T G C T A C A T G A C G T A C G T