Information for 2-ACTCAGAAATCAA (Motif 2)

C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
Reverse Opposite:
C A G T A C G T C T A G G C T A A C G T A C G T A G C T A T G C C G A T A C T G C G T A A T C G A C G T
p-value:1e-23
log p-value:-5.320e+01
Information Content per bp:1.791
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets58.3 +/- 23.1bp
Average Position of motif in Background55.7 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ACTCAGAAATCAA----
AAGGCGAAATCATCGCA
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACTCAGAAATCAA
-GCCATAAATCA-
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACTCAGAAATCAA
GGCCATAAATCA-
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ACTCAGAAATCAA-
----HNRAATCAAT
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A A C G T
A C G T A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACTCAGAAATCAA
GGCCATAAATCA-
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACTCAGAAATCAA
GGCCATAAATCAC
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:ACTCAGAAATCAA--
-----CAAATCACTG
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACTCAGAAATCAA--
CAAAAGTAAACAAAG
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A A C G T A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ACTCAGAAATCAA
--ACTGAAACCA-
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:ACTCAGAAATCAA
----AAAAGTCAA
 C G T A T A G C C G A T G T A C C G T A A T C G C T G A C G T A C G T A C G A T A G T C C G T A G C T A
A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A