Information for 2-VTGAAGTGAHTGTCCT (Motif 2)

T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G C G T A A G T C C G T A C A G T A C G T A T G C C G T A A G T C C A G T C G A T A G T C C T G A A C G T
p-value:1e-10
log p-value:-2.456e+01
Information Content per bp:1.812
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 20.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT
--NAGGTCANTGACCT
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T
A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT-
--GRACAGWMTGTYCTB
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT-
--GVACAGNMTGTYCTB
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.61
Offset:10
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT--
----------TGACCTYA
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT-
--GAACADWATGTTCTT
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--VTGAAGTGAHTGTCCT--
NNNTGAACTCNNTGACCTCN
 A C G T A C G T T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT-
-AGNACANNNTGTNCTN
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T
A C G T C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:VTGAAGTGAHTGTCCT
-----CTCATTGTC--
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT
NAGAACAGNCTGTNCT
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:VTGAAGTGAHTGTCCT-
---------GTGACCTT
 T C G A A G C T A C T G C G T A G T C A A C T G C G A T A T C G C G T A G C T A A C G T C T A G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T