Information for 3-TCCAAGASCCAGA (Motif 9)

A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
Reverse Opposite:
G A C T A G T C A C G T A C T G A C T G A T C G C G A T A T G C C G A T A C G T A T C G A C T G G T C A
p-value:1e-12
log p-value:-2.775e+01
Information Content per bp:1.789
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif16.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.6 +/- 28.5bp
Average Position of motif in Background65.6 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCCAAGASCCAGA----
RACTACAACTCCCAGVAKGC
 A C G T A C G T A C G T A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A A C G T A C G T A C G T A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCCAAGASCCAGA----
AACTACAATTCCCAGAATGC
 A C G T A C G T A C G T A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A A C G T A C G T A C G T A C G T
T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

GFY(?)/Promoter/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCCAAGASCCAGA
ACTACAATTCCC---
 A C G T A C G T A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCCAAGASCCAGA
-CCAACTGCCA--
 A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
A C G T A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TCCAAGASCCAGA
------TGCCAA-
 A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCCAAGASCCAGA
-GCCACACCCA--
 A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TCCAAGASCCAGA--
-----ATGCCAGACN
 A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0149.1_Myb_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCCAAGASCCAGA-
CGACCAACTGCCATGC
 A C G T A C G T A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Myb/MA0100.2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCCAAGASCCAGA
-CCAACTGCCA--
 A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
A C G T A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TCCAAGASCCAGA
----CGTGCCAAG
 A C G T G T A C T A G C C G T A C G T A A T C G C G T A A T G C A G T C A G T C C G T A C T A G C G T A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G