Information for 6-GGAGGCCAAAGGCATG (Motif 20)

C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
Reverse Opposite:
A G T C C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T C T A G A C T G A G T C A G T C A C G T A G T C A G T C
p-value:1e-7
log p-value:-1.796e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 22.3bp
Average Position of motif in Background69.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
--AGGTCAAGGTCA--
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
AGAGTCCAAAGTCCA-
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGAGGCCAAAGGCATG
--AAAACAAAGG----
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
--AGGTCAAGGTCA--
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
-TAGGGCAAAGGTCA-
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
--ACATCAAAGGNA--
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
GTAGGGCAAAGGTCA-
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
-GAGGTCAAAGGTCA-
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGAGGCCAAAGGCATG
--GGAACAAAGR----
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGAGGCCAAAGGCATG
AAAGATCAAAGGGTT-
 C T A G A C T G C G T A A C T G A C T G G T A C A G T C C G T A C G T A C G T A A C T G A C T G T G A C C G T A G C A T C T A G
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T