Information for 12-GGCAGAGAGCCCA (Motif 11)

T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
Reverse Opposite:
G A C T A C T G A T C G T A C G T A G C A C G T G T A C A G C T A T G C A G C T T C A G G T A C A G T C
p-value:1e-11
log p-value:-2.665e+01
Information Content per bp:1.681
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.38%
Number of Background Sequences with motif317.2
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets46.9 +/- 23.4bp
Average Position of motif in Background47.6 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGAGAGCCCA-
TTGGCANNNTGCCAAG
 A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGCAGAGAGCCCA
TGGCACCATGCCAA
 A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGCAGAGAGCCCA
CTGGCAGNCTGCCA-
 A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GGCAGAGAGCCCA
RGKGGGCGGAGC-----
 A C G T A C G T A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGAGAGCCCA
TNNGGGCAG--------
 A C G T A C G T A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GGCAGAGAGCCCA---
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGCAGAGAGCCCA
----CGGAGC---
 T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGCAGAGAGCCCA
TAGGGCAAAGGTCA--
 A C G T A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GGCAGAGAGCCCA---
NNNGGGGCGCCCCCNN
 T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A A C G T A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGAGAGCCCA
NNNACCGAGAGTNNN
 A C G T A C G T T C A G A C T G A G T C T C G A T A C G T C G A A C T G T G C A A C T G A T G C A T G C T G A C C T G A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T