Information for 2-CCACHAGRGGGCG (Motif 2)

A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G
Reverse Opposite:
A G T C C T A G A T G C A G T C A G T C A G T C A G T C A C G T C A G T T A C G A G C T A C T G T C A G
p-value:1e-31
log p-value:-7.253e+01
Information Content per bp:1.674
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif248.5
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets47.0 +/- 18.8bp
Average Position of motif in Background48.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CCACHAGRGGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---CCACHAGRGGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCACHAGRGGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCACHAGRGGGCG-----
-NNNAAGGGGGCGGGNNN
 A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCACHAGRGGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCACHAGRGGGCG
CACAGCAGGGGG--
 A C G T A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCACHAGRGGGCG
-TGTCAGGGGGCG
 A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G
A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

KLF13/MA0657.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCACHAGRGGGCG------
-CAAAAAGGGGCGTGGCAT
 A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

KLF14/MA0740.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCACHAGRGGGCG-----
----AAGGGGGCGTGGCC
 A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CCACHAGRGGGCG----
-----RGKGGGCGKGGC
 A G T C A G T C T C G A A T G C G T C A G T C A A C T G T C A G T A C G A C T G A T C G G A T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A G T T C A G A C T G A C T G G A T C C T A G A C T G C T A G T C A G A T G C