Information for 14-CCAAGGAAACGGG (Motif 19)

A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
Reverse Opposite:
A G T C A G T C G T A C A T C G A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G C T A G
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.7 +/- 24.0bp
Average Position of motif in Background55.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAAGGAAACGGG
-CAAGGHCANV--
 A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCAAGGAAACGGG
TTGCCATGGCAACN--
 A C G T A C G T A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCAAGGAAACGGG
GTTGCCATGGCAACCG-
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAAGGAAACGGG
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAAGGAAACGGG
NDCAGGAARTNN-
 A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCAAGGAAACGGG
TTGCCATGGCAACC--
 A C G T A C G T A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGAAACGGG
BTCAAGGTCA----
 A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCAAGGAAACGGG
TTTCCAGGAAATGG-
 A C G T A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGAAACGGG
NTCAAGGTCA----
 A C G T A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCAAGGAAACGGG--
---AGGAAACAGCTG
 A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A A T G C A C T G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G