Information for 13-AGACGGTAAA (Motif 16)

C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A
Reverse Opposite:
C A G T A C G T A G C T T G C A A T G C T A G C A C T G A C G T A G T C A C G T
p-value:1e-9
log p-value:-2.294e+01
Information Content per bp:1.850
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets36.6 +/- 28.2bp
Average Position of motif in Background40.3 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGTAAA
CCAGACAG----
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGTAAA
CCAGACRSVB--
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AGACGGTAAA
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGACGGTAAA
CWGGCGGGAA-
 A C G T C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGACGGTAAA--
TGGCGGGAAAHB
 C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A A C G T A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGACGGTAAA---
-NGYCATAAAWCH
 C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGACGGTAAA-
-GGCGGGAAAH
 C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A A C G T
A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

ETV2/MA0762.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGACGGTAAA--
-AACCGGAAATA
 C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A A C G T A C G T
A C G T C T G A T C G A T A G C T G A C A C T G A C T G C G T A G C T A T C G A A G C T C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGTAAA
BCAGACWA----
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

FOXI1/MA0042.2/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AGACGGTAAA--
-----GTAAACA
 C G T A A C T G C G T A A G T C A T C G A T C G A C G T C T G A C G T A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G C A T T G C A G T C A C G T A G A T C T C G A