Information for 9-CACGCTTTAT (Motif 14)

T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T
Reverse Opposite:
T C G A A C G T T C G A T C G A T C G A C T A G G A T C T C A G C A G T A T C G
p-value:1e-10
log p-value:-2.393e+01
Information Content per bp:1.669
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif867.3
Percentage of Background Sequences with motif1.83%
Average Position of motif in Targets44.7 +/- 25.4bp
Average Position of motif in Background48.7 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CACGCTTTAT----
--DGWTTTATGRCN
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CACGCTTTAT
CAAGCTT---
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CACGCTTTAT---
----TTTTATTGC
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CACGCTTTAT-----
----TTTTATGGCTN
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CACGCTTTAT---
---NTTTTATGAC
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CACGCTTTAT---
---TTTTTATTGG
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CACGCTTTAT----
---NTTTTATTACN
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CACGCTTTAT---
---NTTTTATTGG
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACGCTTTAT
CACGCA----
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CACGCTTTAT----
----TTTTATTRGN
 T A G C G T C A A G T C C T A G G A T C A G C T A G C T A G C T T G C A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A