Information for 9-GGAGTTGCCA (Motif 28)

A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A
Reverse Opposite:
C A G T A T C G A C T G G T A C G T C A C G T A A G T C A G C T A G T C A G T C
p-value:1e-7
log p-value:-1.778e+01
Information Content per bp:1.832
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif109.3
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets54.1 +/- 25.2bp
Average Position of motif in Background52.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGAGTTGCCA
GGGAATTTCC-
 A C G T A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAGTTGCCA---
-CTGTTGCTAGGS
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A A C G T A C G T A C G T
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGAGTTGCCA-------
---GTTGCCATGGNAAC
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGAGTTGCCA--
----TTGCCAAG
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTTGCCA
GGGAATTTCC-
 A C G T A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGAGTTGCCA
--ARNTGACA
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGAGTTGCCA---
---GGTGCCAAGT
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGAGTTGCCA
GGGGATTTCC-
 A C G T A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGAGTTGCCA-----
NNCGTTGCTATGGNN
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A A C G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGAGTTGCCA--
---CGTGCCAAG
 A C T G T C A G C T G A A C T G G C A T A C G T A C T G T G A C T A G C G T C A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G