Information for 1-GCAGAGAAATGGARAC (Motif 5)

A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C
Reverse Opposite:
A C T G A C G T A G C T A C G T T A G C A G T C C G T A A C G T A G C T A C G T T A G C C G A T A G T C A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.657e+01
Information Content per bp:1.771
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 8.2bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC--
WNAGTCADAVTGAAACTN
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC-
-----GAAACTGAAACT
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC-
-----GAAAMTGAAACT
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

IRF9/MA0653.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAGAGAAATGGARAC-
--AACGAAACCGAAACT
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T
A C G T A C G T G C T A G C T A G A T C C T A G T G C A C G T A G T C A T A G C G A T C C T A G G T C A G C T A C G T A T A G C G A C T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC---
----GGAAANTGAAACTNA
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

PB0033.1_Irf3_1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCAGAGAAATGGARAC--
----GAGAACCGAAACTG
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC
-BAGTCATANTGAAAG
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C
A C G T A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCAGAGAAATGGARAC
CGAAGCACACAAAATA----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T A C G T

IRF1/MA0050.2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC-----
AAANNGAAAGTGAAAGTAAAN
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GCAGAGAAATGGARAC-
-------AATGGAAAAT
 A C T G A G T C C G T A C T A G C G T A A C T G C G T A T C G A C G T A G C A T C T A G A T C G C G T A T C A G G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T