Information for 5-CCGCCCTGCGGGGGAG (Motif 9)

A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
Reverse Opposite:
A T G C C G A T A G T C G A T C T G A C A G T C A G T C C T A G A G T C C G T A C T A G A C T G C T A G A T G C A T C G A C T G
p-value:1e-13
log p-value:-2.998e+01
Information Content per bp:1.820
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.9 +/- 21.8bp
Average Position of motif in Background57.1 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGCCCTGCGGGGGAG
-CCCCCTGCTGTG---
 A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CCGCCCTGCGGGGGAG
------TGCGTGGGYG
 A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCGCCCTGCGGGGGAG
NTGCCCANNGGTNA--
 A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGCCCTGCGGGGGAG
GGCCYCCTGCTGDGH--
 A C G T A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCCTGCGGGGGAG
ACCCCCCCGGGGGGN--
 A C G T A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCCTGCGGGGGAG
NCCCCCCCGGGGGGN--
 A C G T A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCGCCCTGCGGGGGAG--
----ANTGCGGGGGCGGN
 A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCCTGCGGGGGAG
CCCCCCCGGGGGNN---
 A C G T A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T A C G T A C G T

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:9
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CCGCCCTGCGGGGGAG---
-------GTGGGGGAGGGG
 A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G C A T A C T G A C T G C T A G A C T G A C T G G C T A C A T G A C T G C A T G A T C G

EGR1/MA0162.2/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CCGCCCTGCGGGGGAG----
------GGCGGGGGCGGGGG
 A G T C A T G C A T C G A G T C A G T C A G T C A C G T A C T G A G T C A C T G A C T G A C T G C T A G C T A G C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G