Information for 14-GCTCTTTAAA (Motif 17)

A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A C G T A C G T A A C T G C G T A A T C G A G T C
p-value:1e-6
log p-value:-1.428e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets63.5 +/- 26.9bp
Average Position of motif in Background51.0 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCTCTTTAAA-
GCTCGTAAAAA
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Hoxa11/MA0911.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCTCTTTAAA--
GGTCGTAAAATT
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTCTTTAAA---
-GNCTATAAAAGG
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCTCTTTAAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTCTTTAAA
AGCTCATTAT-
 A C G T A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTCTTTAAA-
AGGTCTCTAACC
 A C G T A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTCTTTAAA-
GGTCGTAAAAT
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCTCTTTAAA--------
---GTATAAAAGGCGGGG
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCTCTTTAAA--------
---GTATAAAAGGCGGGG
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTCTTTAAA-
-GTCGTAAAAT
 A C T G A T G C A C G T A G T C A C G T C G A T A C G T C G T A C G T A C G T A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T