Information for 7-ACAGCCAGCCAKA (Motif 15)

C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
Reverse Opposite:
G C A T T G C A C A G T A C T G C T A G A G T C G A C T C A T G T C A G A G T C C G A T A C T G G A C T
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.650
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif461.0
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets40.5 +/- 25.3bp
Average Position of motif in Background51.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACAGCCAGCCAKA--
SCAGYCADGCATGAC
 C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCCAGCCAKA
TGGCAGNCTGCCAG-
 A C G T A C G T C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCCAGCCAKA
CACAGN--------
 A C G T C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ACAGCCAGCCAKA---
CAAATCCAGACATCACA
 A C G T C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACAGCCAGCCAKA
----BCAGACWA-
 C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ACAGCCAGCCAKA
--TGCCAA-----
 C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACAGCCAGCCAKA
-CAGCC-------
 C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACAGCCAGCCAKA
-ATGCCAGACN--
 C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACAGCCAGCCAKA
ACTAGCCAATCA--
 A C G T C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ACAGCCAGCCAKA
CGTGCCAAG----
 C T G A T G A C C G T A C T A G A G T C G T A C C G T A A C T G A G T C T G A C G T C A A C G T C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T