Information for 3-TCAAACCAAGGCT (Motif 4)

A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
Reverse Opposite:
G T C A C T A G A G T C A G T C A C G T A C G T A C T G A C T G A C G T A C G T A G C T A T C G C G T A
p-value:1e-9
log p-value:-2.185e+01
Information Content per bp:1.921
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.1 +/- 21.9bp
Average Position of motif in Background47.6 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TCAAACCAAGGCT
-AAAACAAAGG--
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCAAACCAAGGCT
---AACAAAGG--
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCAAACCAAGGCT
ACTGAAACCA-----
 A C G T A C G T A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCAAACCAAGGCT--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCAAACCAAGGCT--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCAAACCAAGGCT
-GGAACAAAGR--
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TCAAACCAAGGCT
--GAACAATGGN-
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCAAACCAAGGCT
-VRRACAAWGG--
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCAAACCAAGGCT
--RAACAATGGN-
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCAAACCAAGGCT
--AAATCACAGCA
 A C G T T A G C C T G A C G T A C G T A A G T C A G T C G T C A C G T A A C T G A C T G A G T C C A G T
A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A