Information for 2-TCATAAAGCCYTGAGC (Motif 5)

A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
Reverse Opposite:
C A T G A T G C C A G T A T G C C G T A C T G A A C T G A C T G A G T C C A G T A C G T C A G T C G T A A C G T A T C G C G T A
p-value:1e-14
log p-value:-3.274e+01
Information Content per bp:1.723
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.7 +/- 21.6bp
Average Position of motif in Background63.9 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAGCCYTGAGC
GTCGTAAAAT-------
 A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TCATAAAGCCYTGAGC
NGYCATAAAWCH------
 A C G T A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PH0175.1_Vax2/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------TCATAAAGCCYTGAGC
GTGCACTAATTAAGAC------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAGCCYTGAGC
CTAATTAA---------
 A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAGCCYTGAGC
GCAATAAAA--------
 A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TCATAAAGCCYTGAGC
GTCATN-----------
 A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEOX2/MA0706.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TCATAAAGCCYTGAGC
AGTAATTAAC--------
 A C G T A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TCATAAAGCCYTGAGC
GGTAATAAAAA-------
 A C G T A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAGCCYTGAGC
GTCATAAAAN-------
 A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAGCCYTGAGC
GTAATTAA---------
 A C G T A C G T A T G C C G T A A C G T G C T A G T C A G C T A A C T G T G A C A G T C A G C T C G A T A T C G G C T A A T C G G A T C
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T