Information for 5-AGCAGGMCGATGA (Motif 4)

C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
Reverse Opposite:
C G A T A G T C C G T A C A G T A T G C A T C G A C G T G T A C A G T C A C G T C T A G A G T C A C G T
p-value:1e-14
log p-value:-3.274e+01
Information Content per bp:1.816
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.7 +/- 23.9bp
Average Position of motif in Background66.2 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGMCGATGA
CACAGCAGGGGG----
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGMCGATGA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGMCGATGA
GAGCACAGCAGGACA----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGMCGATGA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGMCGATGA
DCHCAGCAGGRGGCC--
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGMCGATGA
DCTCAGCAGG-------
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AGCAGGMCGATGA------
----GGGCGATGACCAYTC
 C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGCAGGMCGATGA---
--CAGGCCNNGGCCNN
 C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGCAGGMCGATGA
----GGCVGTTR-
 C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A
A C G T A C G T A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGCAGGMCGATGA---
--NAGGTCANTGACCT
 C G T A A C T G A G T C C G T A A C T G A C T G G T A C A T G C A T C G G C T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T