Information for 18-RSAGACAGRCAGASAR (Motif 38)

C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
Reverse Opposite:
A G T C A C G T A T C G A G C T A G T C A C G T A C T G A G C T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A G C T
p-value:1e-3
log p-value:-8.989e+00
Information Content per bp:1.872
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 18.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RSAGACAGRCAGASAR
AGGTGNCAGACAG----
 A C G T C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RSAGACAGRCAGASAR
CCAGACAG--------
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RSAGACAGRCAGASAR
AGGTGHCAGACA-----
 A C G T C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RSAGACAGRCAGASAR
CCAGACRSVB------
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RSAGACAGRCAGASAR--
WNAGTCADAVTGAAACTN
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RSAGACAGRCAGASAR
-BAGTCATANTGAAAG
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
A C G T A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RSAGACAGRCAGASAR-
--AGATGKDGAGATAAG
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G A C G T
A C G T A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RSAGACAGRCAGASAR
BCAGACWA--------
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RSAGACAGRCAGASAR
AGCAACAGCCGCACC-
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:RSAGACAGRCAGASAR
---CACAGN-------
 C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C G T A C T A G
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T