Information for 8-CTGGCAATGA (Motif 29)

A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A
Reverse Opposite:
C G A T A G T C C G T A A C G T A C G T A C T G A T G C A T G C C G T A T A C G
p-value:1e-8
log p-value:-1.924e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif74.3
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets51.6 +/- 23.9bp
Average Position of motif in Background51.1 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAATGA
CTTGGCAA---
 A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAATGA-
NCTGTCAATCAN
 A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAATGA-
SCTGTCAVTCAV
 A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAATGA
NTTGGCANN--
 A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGGCAATGA
TTGGCA----
 A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAATGA
GSCTGTCACTCA
 A C G T A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTGGCAATGA-
--GACAATGNN
 A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAATGA
GCTGTCAA---
 A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAATGA-----
ACCGGCAATTAATAAA
 A C G T A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGGCAATGA-
---CCAATCAA
 A T G C A C G T A T C G A T C G G T A C G T C A C G T A C G A T T C A G C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A