Information for 20-GTTGGCCTCCACC (Motif 28)

A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G A C T G C G T A A C T G A C T G G T A C G T A C C G T A C G T A A G T C
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 30.0bp
Average Position of motif in Background60.6 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTTGGCCTCCACC-
--TGACCTTGACCT
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C A C G T
A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GTTGGCCTCCACC
------ATCCAC-
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GTTGGCCTCCACC-----------
----GCCTCCTCCMTCWGACTGKS
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGGCCTCCACC
NGTAGGTTGGCATNNN--
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GTTGGCCTCCACC-
--TGACCTTGACCT
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C A C G T
A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCCTCCACC
GGTTGGCAT-----
 A C G T A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GTTGGCCTCCACC--
---GGCGACCACCGA
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTTGGCCTCCACC
-TTGGCA------
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GTTGGCCTCCACC
--TGACCTYA---
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GTTGGCCTCCACC-
--KGCCCTTCCCCA
 A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T G T A C G T A C C G T A A G T C A G T C A C G T
A C G T A C G T C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A