Information for 5-CTCTMYASTARCC (Motif 3)

A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T G T C A A T C G A C G T C T A G A C T G C G T A A C T G C T G A A T C G
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.5 +/- 30.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCTMYASTARCC---
ATGTACAGTAGCAAAG
 A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTCTMYASTARCC
NSCACTYVAV-----
 A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCTMYASTARCC---
ATTTACAGTAGCAAAA
 A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTCTMYASTARCC-
TGACCTNTAGTAACCC
 A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Bcl6/MA0463.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTCTMYASTARCC
NGCTTTCTAGGAAN-
 A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTCTMYASTARCC
RSCACTYRAG-----
 A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTCTMYASTARCC----
TGACCTAAAGTAACCTCTG
 A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTCTMYASTARCC
AASCACTCAA------
 A C G T A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CTCTMYASTARCC
AGCCACTCAAG-----
 A C G T A C G T A C G T A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CTCTMYASTARCC--
----NNACTTGCCTT
 A T G C A G C T A G T C A C G T G T A C A G T C C G T A A T G C A C G T C G T A C T A G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T