Information for 20-GAAAGATTCACAA (Motif 27)

C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
Reverse Opposite:
A G C T A C G T A C T G G A C T C T A G T C G A G C T A A C G T G T A C G C A T A C G T A C G T G T A C
p-value:1e-7
log p-value:-1.801e+01
Information Content per bp:1.732
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif70.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets44.7 +/- 26.7bp
Average Position of motif in Background44.7 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOS/MA0476.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAAGATTCACAA
-NATGAGTCANN-
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAAAGATTCACAA
----NATTCAAAT
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAAGATTCACAA
ATGCATAATTCA---
 A C G T A C G T C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAAAGATTCACAA
-NATGAGTCACN-
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
A C G T A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAAAGATTCACAA-
CTAATATTGCTAAA
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAAAGATTCACAA-
CTAATATTGCTAAA
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAAAGATTCACAA
ATGAATWATTCATGA
 A C G T A C G T C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAAAGATTCACAA
--CGGTTTCAAA-
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAAAGATTCACAA
GAAATGACTCA---
 A C G T C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAAAGATTCACAA
-GAATATTCAT--
 C A T G T G C A C G T A C G T A C A T G C G T A C G A T A C G T A G T C C G T A T G A C G T C A C T G A
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T