Information for 7-CATGGTTATG (Motif 16)

A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G
Reverse Opposite:
A G T C C G T A C A G T G T C A C G T A A G T C A G T C C G T A A C G T A T C G
p-value:1e-10
log p-value:-2.451e+01
Information Content per bp:1.863
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif61.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets48.5 +/- 32.7bp
Average Position of motif in Background50.7 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CATGGTTATG--
-AAGGATATNTN
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATGGTTATG-
-ATGMATATDC
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CATGGTTATG---
CTCATGAATATTCAT
 A C G T A C G T A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CATGGTTATG--
TACCCTAGTTACCGA
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATGGTTATG-
-ATGAATATTC
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CATGGTTATG-----
CTTTGTTATGCAAAT
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CATGGTTATG-----
CATTGTTATGCAAAT
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATGGTTATG--
TATGCWAATBAV
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CATGGTTATG--
WATGCAAATGAG
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G A C G T A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

FOXG1/MA0613.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CATGGTTATG
-TTGTTTAC-
 A T G C C G T A A C G T A C T G C T A G G C A T A C G T G T C A A C G T A C T G
A C G T C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C A C G T