Information for 20-GGACATRTNCABG (Motif 40)

A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G
Reverse Opposite:
A G T C T C G A C G A T A C T G G A T C C G T A G A C T G T C A C G A T C T A G A C G T T A G C G T A C
p-value:1e-8
log p-value:-1.872e+01
Information Content per bp:1.749
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif46.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.8 +/- 23.2bp
Average Position of motif in Background41.3 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGACATRTNCABG
--GHATATKCAT-
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGACATRTNCABG-
-TTCATTTGCATAT
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGACATRTNCABG-
ATGGGATATATCCGCCT
 A C G T A C G T A C G T A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

Bhlha15/MA0607.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGACATRTNCABG
--ACATATGG---
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G
A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGACATRTNCABG------
--ANTTNTACATGTANTTN
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGACATRTNCABG
--GAATATTCAT-
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGACATRTNCABG-
AATATACATGTAAAATT
 A C G T A C G T A C G T A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGACATRTNCABG-
AATATACATGTAAAACA
 A C G T A C G T A C G T A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGACATRTNCABG
-CTCATTTGCATW
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Twist2/MA0633.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGACATRTNCABG
-NACATATGGN--
 A C T G A T C G C G T A G A T C C G T A A C G T C T G A A C G T C T A G A G T C C G T A A G C T A C T G
A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T