Information for 19-CCTGCTTGYWRRA (Motif 39)

A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
Reverse Opposite:
A C G T A G T C A G C T C G A T T C G A A G T C C G T A C T G A A C T G A G T C C G T A A C T G A C T G
p-value:1e-8
log p-value:-1.894e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets33.5 +/- 22.9bp
Average Position of motif in Background41.5 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTTGYWRRA
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTGCTTGYWRRA
-TTGATTGN----
 A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTTGYWRRA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTTGYWRRA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTGCTTGYWRRA
-TTGCGTGCVA--
 A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCTGCTTGYWRRA
--TGCGTG-----
 A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTTGYWRRA
NCACCTGTN-------
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTTGYWRRA
SNGCACCTGCHS------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTTGYWRRA
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTGCTTGYWRRA
TCCTGTTTACA---
 A C G T A G T C A G T C A C G T A C T G A G T C A G C T A C G T A C T G A G C T C G T A C T G A C T A G C G T A
C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A A C G T A C G T A C G T