Information for 17-AGCTTTAAAAAGATAG (Motif 29)

C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
Reverse Opposite:
A G T C C G A T C T G A A C G T A G T C C G A T A C G T C G A T A C G T C A G T G T C A C T G A C T G A A C T G G A T C G A C T
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.738
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.1 +/- 26.0bp
Average Position of motif in Background39.7 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2D/MA0773.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCTTTAAAAAGATAG
-ACTATAAATAGA---
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCTTTAAAAAGATAG
-TCTAAAAATAGA---
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCTTTAAAAAGATAG
-NATTCAAAT------
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGCTTTAAAAAGATAG
-GCTATAAATAGC---
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGCTTTAAAAAGATAG
CGGTTTCAAA-------
 A C G T C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXP2/MA0593.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGCTTTAAAAAGATAG
--AAGTAAACAAA---
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGCTTTAAAAAGATAG
GNCTATAAAAGG----
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCTTTAAAAAGATAG
-GCTAAAAATAGC---
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGCTTTAAAAAGATAG---
--GTTAAAAAAAAAAATTA
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G A C G T A C G T A C G T
A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGCTTTAAAAAGATAG
-DCYAAAAATAGM---
 C T G A C A T G G T A C A G C T A G C T A C G T G T C A C G T A C G T A T G C A C G T A C T A G C G T A A G C T G C T A T A C G
A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T