Information for 15-CCTCGCTGSAKGATSC (Motif 27)

A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
Reverse Opposite:
A C T G A T G C C G T A A G C T A G T C T G A C A C G T T A C G A G T C C T G A A T C G A G T C A T C G G T C A C T A G C T A G
p-value:1e-9
log p-value:-2.195e+01
Information Content per bp:1.752
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.5 +/- 21.1bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCTCGCTGSAKGATSC
CCACACAGCAGGAGA-
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCTCGCTGSAKGATSC-
--DCHCAGCAGGRGGCC
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTCGCTGSAKGATSC
CCACACAGCAGGAGA-
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTCGCTGSAKGATSC
GAGCACAGCAGGACA-
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CCTCGCTGSAKGATSC
AATCGCACTGCATTCCG-
 A C G T A C G T A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CCTCGCTGSAKGATSC
--DCTCAGCAGG----
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CCTCGCTGSAKGATSC
---CACAGCAGGGGG-
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

ATF4/MA0833.1/Jaspar

Match Rank:8
Score:0.47
Offset:7
Orientation:forward strand
Alignment:CCTCGCTGSAKGATSC----
-------GGATGATGCAATA
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.47
Offset:9
Orientation:forward strand
Alignment:CCTCGCTGSAKGATSC---
---------MTGATGCAAT
 A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.47
Offset:-6
Orientation:forward strand
Alignment:------CCTCGCTGSAKGATSC
GTCATGCHTGRCTGS-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A T G C C T A G A T G C A G C T A C T G A T G C G T C A A C G T A C T G C T G A A C G T A T C G G T A C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T