Information for 9-CAGBCAGGGCTGAGGA (Motif 15)

T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
Reverse Opposite:
A C G T A G T C A G T C C G A T A G T C C G T A A T C G A G T C A G T C A G T C A C G T A C T G T A C G A G T C C G A T A C T G
p-value:1e-11
log p-value:-2.667e+01
Information Content per bp:1.797
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.6 +/- 23.0bp
Average Position of motif in Background58.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGBCAGGGCTGAGGA
SCAGYCADGCATGAC--
 A C G T T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:2
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAGBCAGGGCTGAGGA
-----AGGTGTGA---
 T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CAGBCAGGGCTGAGGA
-----NNNANTGA---
 T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:4
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CAGBCAGGGCTGAGGA
-----AGGTGTGA---
 T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAGBCAGGGCTGAGGA--
-GGCGAGGGGTCAAGGGC
 T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CAGBCAGGGCTGAGGA
GCAGCCAAGCGTGACN-
 A C G T T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

PAX9/MA0781.1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CAGBCAGGGCTGAGGA
TGCAGTCATGCGTGACG-
 A C G T A C G T T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T

MGA/MA0801.1/Jaspar

Match Rank:8
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CAGBCAGGGCTGAGGA
-----AGGTGTGA---
 T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CAGBCAGGGCTGAGGA
GAGGTCAAAGGTCA---
 A C G T T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CAGBCAGGGCTGAGGA
----CAGGTGAGG---
 T G A C C G T A A C T G A T G C A G T C C G T A A C T G C T A G C T A G T A G C C G A T A C T G C G T A A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T