Information for 3-CAATTTTAAT (Motif 17)

T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T
Reverse Opposite:
T G C A C A G T C G A T G T C A C G T A C G T A C G T A C A G T C A G T A T C G
p-value:1e-9
log p-value:-2.188e+01
Information Content per bp:1.650
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif14.17%
Number of Background Sequences with motif3427.8
Percentage of Background Sequences with motif6.92%
Average Position of motif in Targets48.3 +/- 25.5bp
Average Position of motif in Background49.6 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CAATTTTAAT---
--ATATTAATTAA
 T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CAATTTTAAT----
GCTAATTATAATTATC
 A C G T A C G T T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:CAATTTTAAT
----TTTAAT
 T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAATTTTAAT----
TATAATTATAATATTC
 A C G T A C G T T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CAATTTTAAT----
NNTAATTATAATNANN
 A C G T A C G T T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CAATTTTAAT-
--ATTTGAATT
 T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAATTTTAAT---
---TTTTTATTGC
 T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PB0001.1_Arid3a_1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CAATTTTAAT-------
NNNTTTTAATTAANNNN
 T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAATTTTAAT-----
NTNAATTTTATTGNATT
 A C G T A C G T T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTTTAAT
NNCNNAACAATTNT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T C A G T C A G C A T G C A T G C A T C A G T G C T A G T C A A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T