Information for 1-ATGTCTGTAG (Motif 6)

G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G
Reverse Opposite:
A G T C C A G T T G C A A G T C C T G A C T A G C G T A G A T C C G T A C A G T
p-value:1e-10
log p-value:-2.443e+01
Information Content per bp:1.842
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif168.6
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets50.6 +/- 25.2bp
Average Position of motif in Background49.0 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATGTCTGTAG---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATGTCTGTAG
VBSYGTCTGG--
 A C G T A C G T G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATGTCTGTAG
CTGTCTGG--
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGTCTGTAG
TWGTCTGV--
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGTCTGTAG---
-TGTCTGDCACCT
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ATGTCTGTAG-
-GGTCTGGCAT
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G A C G T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATGTCTGTAG
NTGTCAN---
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATGTCTGTAG-------
--GTCWGCTGTYYCTCT
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATGTCTGTAG---
CTGTCTGTCACCT
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:ATGTCTGTAG
---GCTGTG-
 G T C A A C G T C T A G A C G T A G T C A G C T A C T G A C G T G T C A C T A G
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T