Information for 1-AACAAAGGCC (Motif 5)

C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
Reverse Opposite:
C A T G A C T G G T A C A G T C A G C T A G C T A C G T A C T G A C G T A G C T
p-value:1e-12
log p-value:-2.819e+01
Information Content per bp:1.858
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif183.9
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets49.2 +/- 27.8bp
Average Position of motif in Background51.0 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:AACAAAGGCC
AACAAAGG--
 C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGGCC--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGGCC--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGGCC
AAAACAAAGG--
 A C G T A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGGCC
GGAACAAAGR--
 A C G T A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:AACAAAGGCC
RACAAWGG--
 C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AACAAAGGCC
GAACAATGGN-
 A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGGCC
VRRACAAWGG--
 A C G T A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AACAAAGGCC
RAACAATGGN-
 A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGGCC
AAAACAATGG--
 A C G T A C G T C T G A C G T A A G T C G T C A C T G A C T G A A C T G A C T G G T A C G T A C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T