Information for 1-GTGAAGAATCSCT (Motif 4)

A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T
Reverse Opposite:
C G T A A C T G A T C G A C T G C G T A A G C T A C G T A G T C A C G T C G A T A G T C C G T A A T G C
p-value:1e-12
log p-value:-2.875e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 24.3bp
Average Position of motif in Background64.2 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ONECUT2/MA0756.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTGAAGAATCSCT---
--AAAAAATCGATAAT
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

ONECUT1/MA0679.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GTGAAGAATCSCT---
--AAAAAATCGATAAT
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT3/MA0757.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTGAAGAATCSCT---
--AAAAAATCAATAAT
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTGAAGAATCSCT
-TGAATTATGCAT
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTGAAGAATCSCT
ATGAATATTC---
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTGAAGAATCSCT
AATGGAAAAT----
 A C G T A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTGAAGAATCSCT--
ATGAATWATTCATGA
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GTGAAGAATCSCT-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTGAAGAATCSCT--
TAGTGAACAATAGATTT
 A C G T A C G T A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTGAAGAATCSCT---
GGCAAAAGTCCAATAA
 A T C G A C G T A C T G C G T A C G T A C T A G C G T A C T G A A C G T A G T C A T C G T G A C A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T