Information for 11-CGGAGGATATTTAAAA (Motif 20)

A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T A C G T C G T A C G T A C G T A A C G T C G T A C G A T A G T C A G T C A C G T A G T C A G T C T A C G
p-value:1e-8
log p-value:-2.072e+01
Information Content per bp:1.930
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.8 +/- 20.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA
--AAGGATATNTN---
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA
-------NATTCAAAT
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0001.1_Arid3a_1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGAGGATATTTAAAA---
--GGGTTTAATTAAAATTC
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

FOXB1/MA0845.1/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA-
------ATATTTACATA
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA-
ANNNGGATATATCCNNN
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CGGAGGATATTTAAAA-
---TGTATATATATACC
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA---
---NANTTATATATAANGN
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA---
---------TTTGAAACCG
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA-
------ATATTTACATA
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CGGAGGATATTTAAAA-
------NTAATTAATAT
 A T G C A C T G A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T C G A T A C G T C G T A G T C A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T