Information for 2-GARGTCHMWKTTVAGG (Motif 2)

T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
Reverse Opposite:
A T G C G T A C C G A T A T G C T G C A T G C A G T C A C G T A A C T G C A G T C A T G C T G A G T A C A G C T A G C T A T G C
p-value:1e-13
log p-value:-3.203e+01
Information Content per bp:1.605
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.74%
Number of Background Sequences with motif212.3
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets42.3 +/- 22.2bp
Average Position of motif in Background51.4 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXRG/MA0856.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GARGTCHMWKTTVAGG
GGGGTCAAAGGTCA--
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GARGTCHMWKTTVAGG
GGGGTCAAAGGTCA--
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GARGTCHMWKTTVAGG
GGGGTCAAAGGTCA--
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GARGTCHMWKTTVAGG
GAGGTCAAAGGTCA--
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GARGTCHMWKTTVAGG
GGGGTCAAAGTCCAAT
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GARGTCHMWKTTVAGG
GAGGTCAAAGGTCA--
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:GARGTCHMWKTTVAGG---
-----NGCTTTCTAGGAAN
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

MEF2A/MA0052.3/Jaspar

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GARGTCHMWKTTVAGG
----TCTATTTTTAGA
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
A C G T A C G T A C G T A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

HOXA5/MA0158.1/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GARGTCHMWKTTVAGG
-------AATTAGTG-
 T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GARGTCHMWKTTVAGG
AGGGGTCAGAGGTCA--
 A C G T T A C G T C G A C T G A C A T G A G C T G T A C G T C A G T A C C G A T A C G T A C G T A C G T T A C G C G T A A C T G T A C G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T