Information for 4-AGTRCTGTCATAT (Motif 9)

C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
Reverse Opposite:
C G T A G A C T C T G A A C G T A T C G C T G A A G T C C G T A A C T G A G C T C G T A A T G C G A C T
p-value:1e-10
log p-value:-2.496e+01
Information Content per bp:1.776
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif29.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets56.7 +/- 28.7bp
Average Position of motif in Background44.2 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AGTRCTGTCATAT
---CCTGTCAA--
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AGTRCTGTCATAT
---GCTGTCAA--
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:AGTRCTGTCATAT
----NTGTCAN--
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.70
Offset:5
Orientation:forward strand
Alignment:AGTRCTGTCATAT
-----TGTCANYT
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGTRCTGTCATAT
----YTGWCADY-
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTRCTGTCATAT--
NNNCAGCTGTCAATATN
 A C G T A C G T C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTRCTGTCATAT-
AAGCACCTGTCAATAT
 A C G T A C G T C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

JUN/MA0488.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTRCTGTCATAT
AAGATGATGTCAT--
 A C G T A C G T C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTRCTGTCATAT
--VGCTGWCAVB-
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGTRCTGTCATAT
---GCTGTG----
 C G T A T A C G A C G T C T G A G T A C A C G T A C T G A G C T A T G C G T C A G A C T C T G A A C G T
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T