Information for 5-TGCCACAGMCATGACM (Motif 5)

C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
Reverse Opposite:
A C T G T A C G A C G T G T A C G T C A A G C T A C T G A C G T A T G C A C G T A T C G A C G T A C T G A C T G T G A C G C T A
p-value:1e-14
log p-value:-3.248e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.8 +/- 21.9bp
Average Position of motif in Background46.6 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGCCACAGMCATGACM
---CACAGN-------
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGCCACAGMCATGACM
-GCCACACCCA-----
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCCACAGMCATGACM
GGCCACACCCAN----
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCCACAGMCATGACM
CAAATCCAGACATCACA
 A C G T C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGCCACAGMCATGACM
----CCAGACRSVB--
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGCCACAGMCATGACM---
NTTMRCACNNNVSTGYKAANT
 A C G T A C G T C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C A C G T A C G T A C G T
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T

Klf1/MA0493.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGCCACAGMCATGACM
GGCCACACCCA-----
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGCCACAGMCATGACM
----BCAGACWA----
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGCCACAGMCATGACM
AAACCACAGAN------
 A C G T C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGCCACAGMCATGACM
----CCAGACAG----
 C G A T A C T G T G A C A G T C C G T A A T G C G T C A A T C G G T C A A G T C C T G A C A G T A C T G G T C A A G T C G T A C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T