Information for 4-GTATKCATACTTACTC (Motif 4)

C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
Reverse Opposite:
A C T G G T C A A C T G A C G T C G T A T C G A A C T G A C G T C T G A A C G T A C T G G T C A C G T A A C G T G T C A A G T C
p-value:1e-14
log p-value:-3.248e+01
Information Content per bp:1.750
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 28.6bp
Average Position of motif in Background32.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTATKCATACTTACTC
TNNATTATGCATANNTT---
 A C G T A C G T A C G T A C G T C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTATKCATACTTACTC
GHATATKCAT--------
 A C G T A C G T C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTATKCATACTTACTC
GAATATTCAT--------
 A C G T A C G T C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTATKCATACTTACTC
AATTTGCATANT-----
 A C G T C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTATKCATACTTACTC--
--ATGCATAATTAATGAG
 C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C A C G T A C G T
A C G T A C G T C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTATKCATACTTACTC
ATTTGCATA-------
 C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTATKCATACTTACTC
ATTTGCATA-------
 C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTATKCATACTTACTC
ATTTGCATAA------
 C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTATKCATACTTACTC
--ATGAATAATTAATG
 C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
A C G T A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTATKCATACTTACTC
TTCATTTGCATAT------
 A C G T A C G T A C G T C T A G A C G T G T C A A C G T C A G T A G T C C G T A A G C T C G T A A G T C A C G T C G A T G T C A A G T C A C G T G T A C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T