Information for 5-TTTTAAAGCC (Motif 25)

G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
Reverse Opposite:
C T A G T A C G T A G C G A C T A C G T C A G T G C T A C T G A T C G A C T G A
p-value:1e-7
log p-value:-1.625e+01
Information Content per bp:1.650
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif7.42%
Number of Background Sequences with motif1577.4
Percentage of Background Sequences with motif3.21%
Average Position of motif in Targets53.4 +/- 26.8bp
Average Position of motif in Background49.8 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAGCC
CCTTTTATAGNC
 A C G T A C G T G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAGCC-
-TTTGAAACCG
 G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTTAAAGCC
TTTAATTGCN
 G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTTTAAAGCC
ATTTGAATT-
 G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAAAGCC
DGWTTTATGRCN
 A C G T A C G T G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTAAAGCC--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTAAAGCC-
TTTTATGGCTN
 G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAAGCC---
NAATTTTATTACCNNN
 A C G T A C G T A C G T G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTAAAGCC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTAAAGCC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G C T G A C T C G A T G T C A T G C A C T G A A T C G A T G C G A T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T