Information for 2-CTTTTGATTA (Motif 9)

A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A
Reverse Opposite:
A C G T G T C A C G T A A G C T T A G C C G T A C G T A C G T A C G T A A T C G
p-value:1e-9
log p-value:-2.282e+01
Information Content per bp:1.853
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif139.9
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets49.8 +/- 34.7bp
Average Position of motif in Background47.5 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0001.1_Arid3a_1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTGATTA-----
NNNTTTTAATTAANNNN
 A C G T A C G T A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTTTTGATTA--
-NTTTTATTACN
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T A C G T
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

MNX1/MA0707.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTTTTGATTA--
--TTTAATTANN
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTTTTGATTA-
-TTTTTATTGC
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTGATTA----
NNNNTTTGTTTACNNT
 A C G T A C G T A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTTTTGATTA
--TTTAAT--
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A
A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTTTTGATTA-
-NTTTTATTGG
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

MEOX2/MA0706.1/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CTTTTGATTA--
--NTTAATTACN
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTGATTA----
TNAATTTTATTACCTN
 A C G T A C G T A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTTTTGATTA-
---TTGATTGN
 A T G C C G A T A C G T G C A T A C G T A T C G C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G