Information for 4-AGTCTATATGCTT (Motif 15)

G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T
Reverse Opposite:
C T G A C T G A C T A G G T A C C G T A A C G T T C G A C G A T C T G A A C T G T G C A G T A C C A G T
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.682
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif152.3
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets46.8 +/- 25.3bp
Average Position of motif in Background49.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AGTCTATATGCTT-
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGTCTATATGCTT-
----TRTTTACTTW
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTCTATATGCTT
--AAGATATCCTT
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T
A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGTCTATATGCTT--
NNNNTTGTGTGCTTNN
 A C G T G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGTCTATATGCTT-
----TGTTTACTTT
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGTCTATATGCTT--
--TTCATTTGCATAT
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T A C G T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGTCTATATGCTT--
-----ATTTGCATAT
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGTCTATATGCTT-
----TGTTTACTTT
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGTCTATATGCTT
--RCCATMTGTT-
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T
A C G T A C G T C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGTCTATATGCTT--
-----ATTTGCATAA
 G T C A A C T G A C G T A G T C A G C T C G T A A G C T T G C A A C G T C A T G A G T C G A C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A