Information for 1-TGAAWTGGAMWTSYCT (Motif 1)

A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
Reverse Opposite:
C T G A C T A G C T G A A T C G G T C A C G T A C A T G G C A T G A T C G T A C G T C A C G A T C G A T A C G T A T G C C G T A
p-value:1e-15
log p-value:-3.587e+01
Information Content per bp:1.713
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.9 +/- 29.7bp
Average Position of motif in Background17.8 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TGAAWTGGAMWTSYCT
NNNTATTGAATTGNNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:TGAAWTGGAMWTSYCT-
-----GGGAAATCCCCN
 A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0066.1_Sox17_1/Jaspar

Match Rank:3
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TGAAWTGGAMWTSYCT
NNATNAATTGTTTNN----
 A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TGAAWTGGAMWTSYCT
CATTGTTATGCAAAT----
 A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----TGAAWTGGAMWTSYCT
TNNNATGATTTCNNCNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:TGAAWTGGAMWTSYCT
TGAATTATGCAT----
 A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---TGAAWTGGAMWTSYCT
CTTTGTTATGCAAAT----
 A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-TGAAWTGGAMWTSYCT
NTCAAGTGGN-------
 A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----TGAAWTGGAMWTSYCT
NANTTTCAAGTGGTTAN----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.47
Offset:6
Orientation:reverse strand
Alignment:TGAAWTGGAMWTSYCT
------GGAAANCCCC
 A C G T A T C G G T C A C G T A C G T A A C G T A C T G C T A G C G T A G T A C C G A T A C G T A T C G A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C