Information for 23-GCATGGATGGGTG (Motif 43)

A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A T G C A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C T G A G T C
p-value:1e-3
log p-value:-9.011e+00
Information Content per bp:1.951
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 30.0bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCATGGATGGGTG-
GTCATGCHTGRCTGS
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCATGGATGGGTG-
NGTCACGCTTGGCTGC
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCATGGATGGGTG-
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCATGGATGGGTG---
TGCAGTCATGCGTGACG
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCATGGATGGGTG
GGGGCTYGKCTGGGA-
 A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCATGGATGGGTG-
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCATGGATGGGTG
---TGCGTGGGYG
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCATGGATGGGTG---
NGCANTCATGCGTGACG
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PB0167.1_Sox13_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCATGGATGGGTG---
GTATTGGGTGGGTAATT
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GCATGGATGGGTG
NNTNTCATGAATGT---
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A C G A T A C T G A T C G A C T G A C G T A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T