Information for 24-GCAKCCARGCSTGGKG (Motif 41)

A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
Reverse Opposite:
A G T C G T C A A G T C A G T C C G T A A T G C A C T G A G T C A G C T A C G T A T C G A T C G G T C A A C G T A C T G A G T C
p-value:1e-5
log p-value:-1.271e+01
Information Content per bp:1.883
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.9 +/- 30.7bp
Average Position of motif in Background33.0 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCAKCCARGCSTGGKG
SCAGYCADGCATGAC-
 A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCAKCCARGCSTGGKG
GCAGCCAAGCGTGACN
 A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAKCCARGCSTGGKG
GAGGGCAGCCAAGCGTGAC-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C A C G T

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCAKCCARGCSTGGKG
TGCAGTCATGCGTGACG
 A C G T A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAKCCARGCSTGGKG
NGCANTCATGCGTGACG
 A C G T A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GCAKCCARGCSTGGKG
------AGGCCTNG--
 A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------GCAKCCARGCSTGGKG
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GCAKCCARGCSTGGKG
-------TGCGTG---
 A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GCAKCCARGCSTGGKG
------AGGCCTAG--
 A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCAKCCARGCSTGGKG
-AANTCATGCGTGAA-
 A C T G A G T C C G T A A C G T A T G C A T G C C G T A C T G A A C T G A G T C A T C G A C G T A C T G A C T G A C G T A C T G
A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T