Information for 4-TTTNAAATCCAAA (Motif 6)

C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A
Reverse Opposite:
A G C T A C G T C A G T C T A G A T C G G T C A A C G T A C G T A C G T T G A C T C G A C G T A G C T A
p-value:1e-3
log p-value:-7.739e+00
Information Content per bp:1.619
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif20.59%
Number of Background Sequences with motif1950.3
Percentage of Background Sequences with motif4.17%
Average Position of motif in Targets39.4 +/- 30.1bp
Average Position of motif in Background49.8 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTTNAAATCCAAA-
CATTGTTATGCAAAT
 A C G T C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTTNAAATCCAAA-
CTTTGTTATGCAAAT
 A C G T C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TTTNAAATCCAAA-
----ATATGCAAAT
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TTTNAAATCCAAA----
----ATATGCAAATNNN
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTNAAATCCAAA
TTTGAAACCG---
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTTNAAATCCAAA-
----TTATGCAAAT
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TTTNAAATCCAAA-
-----NATTCAAAT
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTTNAAATCCAAA--
GGCAAAAGTCCAATAA
 A C G T C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Tcf7/MA0769.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TTTNAAATCCAAA--
---AAAGATCAAAGG
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

TCF7L2/MA0523.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TTTNAAATCCAAA----
---AAAGATCAAAGGAA
 C A G T G A C T A G C T A C G T C G T A C G T A T G C A A C G T T A G C A G T C G C T A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A