Information for 2-AATAARAGTTTTT (Motif 5)

C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
Reverse Opposite:
C G T A C T G A C G T A C G T A C G T A A T G C A C G T A G T C A G C T A G C T T C G A C G A T A G C T
p-value:1e-4
log p-value:-1.047e+01
Information Content per bp:1.729
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif11.76%
Number of Background Sequences with motif240.4
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets59.0 +/- 24.7bp
Average Position of motif in Background52.3 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYF6/MA0667.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AATAARAGTTTTT
---AACAGCTGTT
 C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
A C G T A C G T A C G T T C G A C T G A A T G C C G T A T C A G A G T C A G C T A C T G A G C T A G C T

MSC/MA0665.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AATAARAGTTTTT
---AACAGCTGTT
 C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
A C G T A C G T A C G T C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T

Tcf21/MA0832.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AATAARAGTTTTT--
-NCAACAGCTGTTGC
 C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T A C G T A C G T
A C G T T C G A A G T C C T G A T G C A A G T C C G T A T A C G G T A C A C G T A C T G A C G T G A C T C T A G A G T C

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AATAARAGTTTTT
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AATAARAGTTTTT
CTACCAATAAAATTCT--
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AATAARAGTTTTT
-----AAGCTTG-
 C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AATAARAGTTTTT
CCTTAATNGNTTTT
 A C G T C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AATAARAGTTTTT
CCAATAAAAA-----
 A C G T A C G T C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---AATAARAGTTTTT
AGAAACGAAAGT----
 A C G T A C G T A C G T C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AATAARAGTTTTT
NCYAATAAAA------
 A C G T A C G T A C G T C T G A C G T A A C G T C T G A C T G A T C A G C G T A A T C G G C A T A C G T C G A T A G C T A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T